The goal of this PhD project will be to get a better understanding of the evolution, history and adaptation of chacma baboons in different environments (i.e. biomes). From modern tissue and ancient (archeological) remains collected in different biomes in South Africa, full genomic information will be generated using high throughput sequencing strategies. To do so, the PhD student will have to extract all modern samples for their DNAs, that will be sent for sequencing (bench laboratory work). For archeological remains, all remains will be treated in a dedicated ancient DNA laboratory (Orlando Ludovic Laboratory, France). Sequences obtained will be then analyzed using sets of bio-informatics and population genetics tools. This will allow the student to elucidate the evolutionary origin and history of chacma baboons as well as to look for their key genetic adaptations in specific environments. This project will allow to get new information about the genetic basis of chacma baboons adaptation that enable these wild animals to become successful species in a large diversity of environments, which is a key question in the study of animal biology and conservation. Candidates should have a MSc Honours degree (or equivalent), formation in molecular biology (experience in a laboratory will be a plus), genetics and bioinformatics (expected very good experience in different bioinformatic languages) as well as a valid driver’s licence. Preference will be given to South African students. Students will be based at the Nelson Mandela University’s George Campus. A bursary of R120 000 per year is offered for a period of 3 years (Mars 2023 – February 2026). Candidate are expected to apply to NRF and PJRS bursaries from 2023. Supervisors: Virginie Rougeron (Research Associate at NMU, CRCN at CNRS) and Franck Prugnolle (Research Associate at NMU and DR1 at CNRS), both evolutionary biologists and geneticists, will be the main co-supervisors of this PhD thesis. Michael Fontaine (CR CNRS), specialist in genomics and evolutionary adaptation of organisms in conservation, will co-supervised the student. Contact: email@example.com
We start the chacma baboons fecal samples collection session in Western Cape along an anthropisation gradient.
Elizabeth joined us for her Master 2 internship to study the diet characteristics of chacma baboons along a wild-rural-urban transect in Western Cape, South Africa. She will be responsible of the samples collection and of the stable isotope diet analysis. A metagenomic part will also be included to complete this project.